Publications

Publication

Genetic analysis of global faba bean diversity, agronomic traits and selection signatures

Date: 19 April 2023

Contributors: Cathrine Kiel Skovbjerg, Deepti Angra, Tom Robertson‑Shersby‑Harvie, Jonathan Kreplak, Gabriel Keeble‑Gagnère, Sukhjiwan Kaur, Wolfgang Ecke, Alex Windhorst, Linda Kærgaard Nielsen, Andrea Schiemann, Jens Knudsen, Natalia Gutierrez, Vasiliki Tagkouli, Lavinia Ioana Fechete, Luc Janss, ·Jens Stougaard, Ahmed Warsame, Sheila Alves, Hamid Khazaei, Wolfgang Link, Ana Maria Torres, Donal Martin O’Sullivan, Stig Uggerhøj Andersen

Journal: Theoretical and Applied Genetics

Publication

Dancing to a different tune, can we switch from chemical to biological nitrogen fixation for sustainable food security?

Date: 14 March 2023

Contributors: Min-Yao Jhu,Giles E. D. Oldroyd

Journal: PLOS Biology

Publication

The giant diploid faba genome unlocks variation in a global protein crop.

Date: 8 March 2023

Contributors: Murukarthick Jayakodi, Agnieszka A. Golicz, Jonathan Kreplak, Lavinia I. Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphaël Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W. Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O. Warsame, Alexander H. J. Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Doležel, Liisa U. Holm, Luc L. Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J. Snowdon, Nils Stein, Frederick L. Stoddard, Jens Stougaard, Nadim Tayeh, Ana M. Torres, Björn Usadel, Ingo Schubert, Donal Martin O’Sullivan, Alan H. Schulman & Stig Uggerhøj Andersen

Journal: Nature

Publication

Sensor NLR immune proteins activate oligomerization of their NRC helpers in response to plant pathogens

Date: 1 March 2023

Contributors: Mauricio P Contreras, Hsuan Pai, Yasin Tumtas, Cian Duggan, Enoch Lok Him Yuen, Angel Vergara Cruces, Jiorgos Kourelis, Hee-Kyung Ahn, Kim-Teng Lee, Chih-Hang Wu, Tolga O Bozkurt, Lida Derevnina, Sophien Kamoun

Journal: The EMBO Journal

Publication

An optimised transformation protocol for Anthoceros agrestis and three more hornwort species

Date: 23 February 2023

Contributors: Waller M; Frangedakis E; Marron A; Sauret-Gueto S; Rever J; Raja Rubenstein Sabbagh C; Hibberd J; Haseloff J; Renzaglia K; Szövényi P

Journal: The Plant Journal

Publication

Multi-trait ensemble genomic prediction and simulations of recurrent selection highlight importance of complex trait genetic architecture for long-term genetic gains in wheat

Date: 18 February 2023

Contributors: Fradgley N, Gardner KA, Bentley AR, Howell P, Ian J Mackay, Scott MF, Mott R, Cockram J

Journal: in silico Plants

Publication

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Date: 6 February 2023

Contributors: Chen H, King R, Smith D, Bayon C, Ashfield T, Torriani S, Kanyuka K, Hammond-Kosack K, Bieri S, Rudd J

Journal: BMC Biology

Publication

One hundred important questions for plant science - reflecting on a decade of plant research

Date: 16 January 2023

Contributors: Emily R Larson, Emily May Armstrong, Helen Harper, Sandra Knapp, Keith J Edwards, Don Grierson, Guy Poppy, Mark W Chase, Jonathan D G Jones, Ruth Bastow, Graham Jellis, Steve Barnes, Paul Temple, Matthew Clarke, Giles Oldroyd, Claire S Grierson

Journal: The New phytologist

Publication

A large bioassay identifies Stb resistance genes that provide broad resistance against Septoria tritici blotch disease in the UK

Date: 3 January 2023

Contributors: Tidd H, Rudd JJ, Ray RV, Bryant R, Kanyuka K

Journal: Frontiers in Pant Science

Publication

Longer epidermal cells underlie a quantitative source of variation for wheat flag leaf size

Date: 15 December 2022

Contributors: Zanella C, Rotondo M, McCormick-Barnes C, Mellers G, Corsi B, Berry S, Ciccone G, Day R, Faralli M, Galle A, Gardner K, Jacobs J, Ober E, Sanchez del Rio A, Van Rie J, Lawson T, Cockram J

Journal: New Phytologist

Publication

A low-cost and open-source solution to automate imaging and analysis of cyst nematode infection assays for Arabidopsis thaliana

Date: 12 December 2022

Contributors: Olaf Prosper Kranse, Itsuhiro Ko, Roberta Healey, Unnati Sonawala, Siyuan Wei, Beatrice Senatori, Francesco De Batté, Ji Zhou & Sebastian Eves-van den Akker

Journal: Plant methods

Publication

Rhizopine biosensors for plant-dependent control of bacterial gene expression

Date: 25 November 2022

Contributors: Timothy L Haskett, Barney A Geddes, Ponraj Paramasivan, Patrick Green, Samir Chitnavis, Marta D Mendes, Beatriz Jorrín, Hayley E Knights, Tahlia R Bastholm, Joshua P Ramsay, Giles E D Oldroyd, Philip S Poole

Journal: Environmental microbiology

Publication

Nutrient regulation of lipochitooligosaccharide recognition in plants via NSP1 and NSP2

Date: 28 October 2022

Contributors: Xin-Ran Li, Jongho Sun, Doris Albinsky, Darius Zarrabian, Raphaella Hull, Tak Lee, Edwin Jarratt-Barnham, Chai Hao Chiu, Amy Jacobsen, Eleni Soumpourou, Alessio Albanese, Wouter Kohlen, Leonie H. Luginbuehl, Bruno Guillotin, Tom Lawrensen, Hui Lin, Jeremy Murray, Emma Wallington, Wendy Harwood, Jeongmin Choi, Uta Paszkowski & Giles E. D. Oldroyd

Journal: Nature Communications

Publication

The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5

Date: 19 October 2022

Contributors: Shahid Siddique, Zoran S. Radakovic, Clarissa Hiltl, Clement Pellegrin, Thomas J. Baum, Helen Beasley, Andrew F. Bent, Oliver Chitambo, Divykriti Chopra, Etienne G. J. Danchin, Eric Grenier, Samer S. Habash, M. Shamim Hasan, Johannes Helder, Tarek Hewezi, Julia Holbein, Martijn Holterman, Sławomir Janakowski, Georgios D. Koutsovoulos, Olaf P. Kranse, Jose L. Lozano-Torres, Tom R. Maier, Rick E. Masonbrink, Badou Mendy, Esther Riemer, Mirosław Sobczak, Unnati Sonawala, Mark G. Sterken, Peter Thorpe, Joris J. M. van Steenbrugge, Nageena Zahid, Florian Grundler & Sebastian Eves-van den Akker

Journal: Nature Communications

Publication

Folding features and dynamics of 3D genome architecture in plant fungal pathogens

Date: 17 October 2022

Contributors: Xia, C.J., Huang, L.†, Huang, J., Zhang, H., Huang, Y., Benhamed, M., Wang, M.N., Chen, X.M., Zhang, M., Chen, W.Q., and Liu, T.G

Journal: Environmental microbiology

Publication

AirMeasurer: open-source software to quantify static and dynamic traits derived from multi-seas7on aerial phenotyping to empower genetic mapping studies in rice.

Date: 28 July 2022

Contributors: Sun G, Lu H, et al., Han B*, Zhou J*

Journal: New Phytologist

Publication

Seed Development and Protein Accumulation Patterns in Faba Bean (Vicia faba, L.)

Date: 18 July 2022

Contributors: Cathrine Kiel Skovbjerg, Deepti Angra, Tom Robertson‑Shersby‑Harvie, Jonathan Kreplak, Gabriel Keeble‑Gagnère, Sukhjiwan Kaur, Wolfgang Ecke, Alex Windhorst, Linda Kærgaard Nielsen, Andrea Schiemann, Jens Knudsen, Natalia Gutierrez, Vasiliki Tagkouli, Lavinia Ioana Fechete, Luc Janss, Jens Stougaard, Ahmed Warsame, Sheila Alves, Hamid Khazaei, Wolfgang Link, Ana Maria Torres, Donal Martin O’Sullivan, Stig Uggerhøj Andersen

Journal: Journal of Agricultural and Food Chemistry

Publication

Coexpression of MEIOTIC-TOPOISOMERASE VIB-dCas9 with guide RNAs specific to a recombination hotspot is insufficient to increase crossover frequency in Arabidopsis

Date: 7 July 2022

Contributors: Nataliya E Yelina, Daniel Holland, Sabrina Gonzalez-Jorge, Dominique Hirsz, Ziyi Yang, Ian R Henderson

Journal: G3 Genes|Genomes|Genetics