Publications

Publication

SeedGerm: a cost-effective phenotyping platform for automated seed imaging and machine-learning based phenotypic analysis of crop seed germination

Date: 13 June 2020

Contributors: Colmer J, et al., Penfield S*, Zhou J*

Journal: New Phytologist

Publication

ASY1 acts as a dosage-dependent antagonist of telomere-led recombination and mediates crossover interference in Arabidopsis’

Date: 4 June 2020

Contributors: Lambing, C.A., Kuo, P.C., Tock, A.J., Topp, S.D. and Henderson I.R.

Journal: Proceedings of the National Academy of Sciences USA

Publication

Grain number and genotype drive nitrogen-dependent yield response in the C4 model Setaria italica (L.) P. Beauv.

Date: 25 March 2020

Contributors: Bandyopadhyay T, Swarbreck SM, Jaiswal V, Gupta R, Bentley AR, Griffiths H, Prasad M

Journal: Journal of Advanced Research

Publication

Fluorescent reporters for functional analysis in rice leaves

Date: 11 February 2020

Contributors: Leonie H. Luginbuehl, Sherif El-Sharnouby, Na Wang, and Julian M. Hibberd.

Journal: Plants direct

Publication

Reinforcement learning for sustainable agriculture

Date: 4 November 2019

Contributors: Jonathan Binas; Leonie Luginbuehl; Yoshua Bengio

Journal: ICML 2019 Workshop Climate Change: How Can AI Help.

Publication

A roadmap for lowering crop nitrogen requirement

Date: 8 October 2019

Contributors: Swarbreck SM, Wang M, Wang Y, Kindred D, Sylvester-Bradley R, Shi Weiming, Varinderpal-Singh, Bentley AR, Griffiths H

Journal: Trends in Plant Science

Publication

Combining computer vision and deep learning to enable ultra-scale aerial phenotyping and precision agriculture: a case study of lettuce

Date: 1 June 2019

Contributors: Bauer, A., Bostrom, A.G., Ball, J., Applegate, C., Cheng, T., Laycock, S., Rojas, S.M., Kirwan, J. and Zhou, J

Journal: Horticulture Research

Publication

Characterizing standard genetic parts and establishing common principles for engineering legume and cereal roots

Date: 25 April 2019

Contributors: Doreen Feike, Andrey V. Korolev, Eleni Soumpourou, Eiichi Murakami, Dugald Reid, Andrew Breakspear, Christian Rogers, Simona Radutoiu, Jens Stougaard, Wendy A. Harwood, Giles E. D. Oldroyd, J. Benjamin Miller

Journal: Plant Biotechnology Journal

School: Sainsbury Laboratory

Publication

CropSight: a scalable open and distributed data management system for crop phenotyping and IoT based crop management

Date: 31 January 2019

Contributors: Reynolds D, et al., Zhou J*

Journal: GigaScience

Publication

Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop

Date: 6 March 2018

Contributors: K Głowacka, J Kromdijk, K Kucera, J Xie, AP Cavanagh, L Leonelli

Journal: Nature communications

Publication

Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis

Date: 20 February 2018

Contributors: Serra, H., Lambing, C.A., Griffin, C.H., Topp, S.D., Nageswaran, D.C., Underwood, C.J., Ziolkowski, P.A., Seguela-Arnaud, M., Fernandes, J.B., Mercier, R. and Henderson, I.R.

Journal: Proceedings of the National Academy of Sciences USA

Publication

Ancient duons may underpin spatial patterning of gene expression in C4 leaves

Date: 5 February 2018

Contributors: Ivan Reyna-Llorens, Steven J. Burgess, Gregory Reeves, Pallavi Singh, Sean R. Stevenson, Ben P. Williams, Susan Stanley, and Julian M. Hibberd

Journal: PNAS

Publication

Speed breeding is a powerful tool to accelerate crop research and breeding

Date: 1 January 2018

Contributors: Amy Watson, Sreya Ghosh, Matthew J. Williams, William S. Cuddy, James Simmonds, María-Dolores Rey, M. Asyraf Md Hatta, Alison Hinchliffe, Andrew Steed, Daniel Reynolds, Nikolai M. Adamski, Andy Breakspear, Andrey Korolev, Tracey Rayner, Laura E. Dixon, Adnan Riaz, William Martin, Merrill Ryan, David Edwards, Jacqueline Batley, Harsh Raman, Jeremy Carter, Christian Rogers, Claire Domoney, Graham Moore, Wendy Harwood, Paul Nicholson, Mark J. Dieters, Ian H. DeLacy, Ji Zhou, Cristobal Uauy, Scott A. Boden, Robert F. Park, Brande B. H. Wulff & Lee T. Hickey

Journal: Nature Plants

Publication

Leaf-GP: an open and automated software application for measuring growth phenotypes for arabidopsis and wheat

Date: 22 December 2017

Contributors: Ji Zhou, Christopher Applegate, Albor Dobon Alonso, Daniel Reynolds, Simon Orford, Michal Mackiewicz, Simon Griffiths, Steven Penfield & Nick Pullen

Journal: Plant Methods volume

Publication

Understanding the arbuscule at the heart of endo- mycorrhizal symbioses in plants

Date: 11 September 2017

Contributors: Leonie H. Luginbuehl, Giles E.D. Oldroyd

Journal: Current Biology

Publication

Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant

Date: 8 June 2017

Contributors: Leonie H. Luginbuehl, Guillaume N. Menard, Smita Kurup, Harrie van Erp, Guru Radhakrishnan, Andrew Breakspear, Giles E.D. Oldroyd, and Peter J. Eastmond

Journal: Science

Publication

Genomic innovation for crop improvement.

Date: 16 March 2017

Contributors: Bevan M. W., Uauy C., Wulff B. B. H., Zhou J., Krasileva K., Clark M. D.

Journal: Nature

Publication

Quantification and Sequencing of Crossover Recombinant Molecules from Arabidopsis Pollen DNA

Date: 31 January 2017

Contributors: Kyuha Choi, Nataliya E. Yelina, Heïdi Serra & Ian R. Henderson

Journal: Methods in Molecular Biology